copied from Nucleic Acids Research, 2005, Vol. 33, Database issue (link directs to table of contents with many original papers on the below mentioned databases)
retrun to Database resources and links

No.b Database_name_ Full_name_and/or_description______________ URL 9. Microarray Data and other Gene Expression Databases 634 5'SAGE 5'-end serial analysis of gene expression http://5sage.gi.k.u-tokyo.ac.jp/ 338 ArrayExpress Public collection of microarray gene expression data http://www.ebi.ac.uk/arrayexpress 11 Axeldb Gene expression in Xenopus laevis http://www.dkfz-heidelberg.de/abt0135/axeldb.htm 12 BodyMap Human and mouse gene expression data http://bodymap.ims.u-tokyo.ac.jp/ 417 BGED Brain gene expression database http://love2.aist-nara.ac.jp/BGED 432 CleanEx Expression reference database, linking heterogeneous expression data to facilitate cross-dataset comparisons http://www.cleanex.isb-sib.ch/ 657 dbERGEII Database of experimental results on gene expression: genomic alignment, annotation and experimental data http://dberge.cse.psu.edu/menu.html 454 EICO DB Expression-based imprint candidate organiser: a database for discovery of novel imprinted genes http://fantom2.gsc.riken.jp/EICODB/ 455 emap Atlas Edinburgh mouse atlas: a digital atlas of mouse embryo development and spatially mapped gene expression http://genex.hgu.mrc.ac.uk/ 13 EPConDB Endocrine pancreas consortium database http://www.cbil.upenn.edu/EPConDB 110 EpoDB Genes expressed during human erythropoiesis http://www.cbil.upenn.edu/EpoDB/ 14 FlyView Drosophila development and genetics http://pbio07.uni-muenster.de/ 326 GeneAnnot Revised annotation of Affymetrix human gene probe sets http://genecards.weizmann.ac.il/geneannot/ 325 GeneNote Human genes expression profiles in healthy tissues http://genecards.weizmann.ac.il/genenote/ 330 GenePaint Gene expression patterns in the mouse http://www.genepaint.org/Frameset.html 676 GeneTide A transcriptome-focused member of the GeneCards suite http://genecards.weizmann.ac.il/genetide/ 481 GeneTrap Expression patterns in an embryonic stem library of gene trap insertions http://www.cmhd.ca/sub/genetrap.asp 603 GEO Gene expression omnibus: gene expression profiles http://www.ncbi.nlm.nih.gov/geo/ 485 GermOnline Gene expression in mitotic and meiotic cell cycle http://www.germonline.org/ 15 GXD Mouse gene expression database http://www.informatics.jax.org/menus/expression_menu.shtml 681 H-ANGEL Human anatomic gene expression library http://www.jbirc.aist.go.jp/hinv/index.jsp 493 HemBase Genes expressed in differentiating human erythroid cells http://hembase.niddk.nih.gov/ 23 HugeIndex Expression levels of human genes in normal tissues http://hugeindex.org/ 17 Kidney Development Database Kidney development and gene expression http://golgi.ana.ed.ac.uk/kidhome.html 778 LOLA List of lists annotated: a comparison of gene sets identified in different microarray experiments http://www.lola.gwu.edu/ 18 MAGEST Ascidian (Halocynthia roretzi) gene expression patterns http://www.genome.ad.jp/magest 699 MAMEP Molecular anatomy of the mouse embryo project: gene expression data on mouse embryos http://mamep.molgen.mpg.de/ 339 MEPD Medaka (freshwater fish Oryzias latipes) gene expression pattern database http://www.embl.de/mepd/ 19 MethDB DNA methylation data, patterns and profiles http://www.methdb.de/ 537 Mouse SAGE SAGE libraries from various mouse tissues and cell lines http://mouse.biomed.cas.cz/sage 541 NASCarrays Nottingham Arabidopsis Stock Centre microarray database http://affymetrix.arabidopsis.info 545 NetAffx Public Affymetrix probesets and annotations http://www.affymetrix.com/ 711 Osteo-Promoter Database Genes in osteogenic proliferation and differentiation http://www.opd.tau.ac.il 154 PEDB Prostate expression database: ESTs from prostate tissue and cell type-specific cDNA libraries http://www.pedb.org/ 558 PEPR Public expression profiling resource: expression profiles in a variety of diseases and conditions http://microarray.cnmcresearch.org/pgadatatable.asp 21 RECODE Genes using programmed translational recoding in their expression http://recode.genetics.utah.edu/ 568 RefExA Reference database for human gene expression analysis http://www.lsbm.org/db/index_e.html 739 rOGED Rat ovarian gene expression database http://web5.mccs.uky.edu/kolab/rogedendo.aspx 712 SAGEmap NCBI's resource for SAGE data from various organisms http://www.ncbi.nlm.nih.gov/SAGE 742 SIEGE Smoking Induced Epithelial Gene Expression http://pulm.bumc.bu.edu/siegeDB 22 Stanford Microarray Database Raw and normalized data from microarray experiments http://genome-www.stanford.edu/microarray 24 Tooth Development Database Gene expression in dental tissue http://bite-it.helsinki.fi/

^a Each database is shown in the list only once, often in a category that was arbitrarily chosen among two or three appropriate ones. In the online version of this list at the NAR website (http://nar.oupjournals.org/), a database can be listed under two categories.

^b Accession number of the database in the online list; can be used to view the database summary, e.g. http://www3.oup.co.uk/nar/database/summary/1 shows the summary for DDBJ.